Invited Paper Session

Recent Advances in the Use of Sequence Data in Infectious Disease Tracking

Mon, Aug 4, 10:30 AM - 12:20 PM Room CC-207C Music City Center

Toni GuiOrganizerTuo LinChair

Section on Statistics in Epidemiology co: Section on Statistics in Genomics and Geneticsco: Health Policy Statistics Section Applied

4 Presentations

The use of the local branching index for characterizing transmission in genomic epidemiological datasets

10:35 AM - 10:55 AM

Alex Beams (Simon Fraser University)

Infectious diseases Phylogenetic tree

Bayesian inference of timed phylogenetic networks from genomic sequences to quantify the horizontal movement of genes for viral and bacterial infectious diseases

10:55 AM - 11:15 AM

Nicola Mueller (University of California, San Francisco)

Phylogenetic networks Phylodynamics Bayesian inference Infectious diseases MCMC Genomic epidemiology

Generalized Estimating Equation for Modeling Cell-Cell Correlation in Single-Cell RNA Seq Data

11:15 AM - 11:35 AM

Xinlian Zhang (University of California, San Diego)

Co-authors: Tuo Lin (University of Florida), Toni Gui (University of Florida), Nadejda Beliakova-bethell (University of California, San Diego), Xin Tu (University of California San Diego)

HIV latency single cell RNA seq

Incorporating Genomic Sequences into Stochastic Transmission Modeling to Improve the Forecasting of the Spread of SARS-CoV-2

11:35 AM - 11:55 AM

Toni Gui (University of Florida)

Co-authors: Ira Longini (University of Florida)

Genomic epidemiology Phylodynamics Infectious diseases

Discussant

Ira Longini (University of Florida)