Recent Methodological Advances in Spatial Omics Studies

Tue, Aug 6, 10:30 AM - 12:20 PM

Jiuzhou WangChair

Section on Statistics in Genomics and Genetics

7 Presentations

A Topological Approach to Characterizing Spatial Proteomics Data

10:35 AM - 10:50 AM

Sarah Samorodnitsky

Co-authors: Michael Wu (Fred Hutchinson Cancer Center)

Addressing the mean-variance relationship in spatially resolved transcriptomics data with spoon

10:50 AM - 11:05 AM

Kinnary Shah

Co-authors: Boyi Guo (Johns Hopkins Bloomberg School of Public Health), Stephanie Hicks (Johns Hopkins University, Bloomberg School of Public Health)

Cell state heterogeneity drives the need for single-cell reference when deconvolving spatial transcriptomics data

11:05 AM - 11:20 AM

MaryLena Bleile (Memorial Sloan Kettering Cancer Center)

Co-authors: James Smithy (Memorial Sloan Kettering Cancer Center), Xiyu Peng (Texas A&M University), Miranda Hunter (Memorial Sloan Kettering Cancer Center), Allison Reiner (Memorial Sloan Kettering Cancer Center), Fiona Ehrich (Memorial Sloan Kettering Cancer Center), Andrea Moy (Memorial Sloan Kettering Cancer Center), Margaret Callahan (University of Connecticut), Richard White (Oxford University), Katherine Panageas (Memorial Sloan-Kettering Cancer Center), Ronglai Shen (Memorial Sloan-Kettering Cancer Center)

Cross-platform Gene Expression Data Imputation

11:20 AM - 11:35 AM

Alex Jiang

Co-authors: Wei Sun (Fred Hutchinson Cancer Center)

cSVG: Improved spatial domain detection by Spatially Variable Gene clustering

11:35 AM - 11:50 AM

Sikta Das Adhikari (Michigan State University)

Co-authors: Jianrong Wang (Michigan State University), Yuehua Cui (Michigan State University)

Geostatistical modeling of continuous molecular landscapes in spatial transcriptomic data.

11:50 AM - 12:05 PM

Saumyadipta Pyne (National Institute of Arthritis and Musculoskeletal and Skin Diseases)

Co-authors: Morteza Hajihosseini (Stanford Department of Urology), Eduardo Patino Martinez (National Institute of Arthritis and Musculoskeletal and Skin Diseases), Mariana J Kaplan (National Institute of Arthritis and Musculoskeletal and Skin Diseases)

Investigating spatial dynamics in spatial omics data with StarTrail

12:05 PM - 12:20 PM

jiawen chen

Co-authors: Caiwei Xiong (University of North Carolina at Chapel Hill), Aritra Halder (Drexel University), Yun Li (UNC), Didong Li