Phenotyping, biomarkers, and single-cell omics

Mon, Aug 7, 10:30 AM

Euphy WuChair

Section on Statistics in Genomics and Genetics

7 Presentations

WITHDRAWN Meta-clustering with Gaussian mixture model with covariate adjustment

10:35 AM - 10:50 AM

Co-authors: Tanbin Rahman, Ruitao Lin (University of Texas, MD Anderson Cancer Center)

Limitations in Gene Set Variation Analysis with Practical Solutions for more Stable Results

10:50 AM - 11:05 AM

Lorin Towle-Miller (GSK)

Co-authors: William Jordan (GSK), Johannes Freudenberg (GSK)

Application of Closed-form Gamma Mixture Model in mxIF Cell Gating

11:05 AM - 11:20 AM

Jiangmei Xiong

Co-authors: Eliot McKinley (GSK plc), Joseph Roland (Vanderbilt University Medical Center), Martha Shrubsole (Vanderbilt University Medical Center), Ken Lau (Vanderbilt University Medical Center), Simon Vandekar (Vanderbilt University)

A modeling method for clinical trial data with multiple types of biomarkers in high dimension

11:20 AM - 11:35 AM

Haocheng Li (Hoffmann-La Roche Limited (Roche Canada))

Co-authors: Minu Srivastava (Genentech), Barzin Nabet (Genentech)

Canopy2: tumor phylogeny inference using bulk DNA and single-cell RNA sequencing

11:35 AM - 11:50 AM

Ann Marie Weideman (University of North Carolina at Chapel Hill)

Co-authors: Rujin Wang, Joseph Ibrahim (University of North Carolina), Yuchao Jiang (University of North Carolina, Chapel Hill)

Discovering Spatial Differential Expression with Graph Convolutional Networks

11:50 AM - 12:05 PM

Roman Kouznetsov

Co-authors: Jackson Loper (University of Michigan), Jeffrey Regier (University of Michigan)

A flexible joint inspection approach for visual and transcriptomic tissue architecture in SRT

12:05 PM - 12:20 PM

Kyle Coleman

Co-authors: Jian Hu (Emory School of medicine), Daiwei Zhang (University of Pennsylvania), Mingyao Li (University of Pennsylvania, Perelman School of Medical)

Session participants

Kimberly Siegmund (University of Southern California, School of Medicine)

Participant