Modeling cell type deconvolution and cell type-specific effects

Thu, Aug 10, 8:30 AM

Deborah KunkelChair

Section on Statistics in Genomics and Genetics

7 Presentations

WITHDRAWN Robust Statistical Inference for Cell Type Deconvolution

8:35 AM - 8:50 AM

Co-authors: Dongyue Xie, Jingshu Wang (University of Chicago)

MODE: multi-omics cellular deconvolution with single-cell DNA methylation and RNA-seq references

8:50 AM - 9:05 AM

Manqi Cai

Co-authors: Juan Celedón (Department of Pediatrics, University of Pittsburgh Medical Center Children's Hospital of Pittsburgh), Wei Chen (University of Pittsburgh), Chris McKennan (The University of Chicago), Jiebiao Wang (University of Pittsburgh)

Cell-type deconvolution across genomic data modalities

9:05 AM - 9:20 AM

Weiqiang Zhou (Johns Hopkins University, Bloomberg School of Public Health)

Co-authors: Zeqing Li (Johns Hopkins University)

Variant component test for cell-type-aware analysis of RNA-seq data

9:20 AM - 9:35 AM

Chong Jin

Co-authors: Yuxuan Lin (University of Pennsylvania), Brian Lee (University of Pennsylvania), Li Shen (University of Pennsylvania), Qi Long

Fine-Scale Inference for Aggregate-Level DNA Methylation Data

9:35 AM - 9:50 AM

Ruofan Jia (The Chinese University of Hong Kong)

Co-authors: Yingying Wei (The Chinese University of Hong Kong)

Identifying and Understanding Active DE Genes for ASD via Gene Networks and Multi-Sourced Data

9:50 AM - 10:05 AM

Maya Shen

Co-authors: Jinjin Tian (Carnegie Mellon University), Kathryn Roeder (Carnegie Mellon University)

Unveiling spatial architecture in multiplexed imaging data with a spatial topic model

10:05 AM - 10:20 AM

Xiyu Peng (Memorial Sloan Kettering)

Co-authors: Katherine Panageas (Memorial Sloan-Kettering Cancer Center), James Smithy (Memorial Sloan Kettering Cancer Center), Margaret Callahan (Memorial Sloan Kettering Cancer Center), Ronglai Shen (Memorial Sloan-Kettering Cancer Center)

Session participants

Kimberly Siegmund (University of Southern California, School of Medicine)

Participant