A Bayesian Approach to Biomarker Selection Through MiRNA Regulatory Network

• Activity Number: 429
• Type: Contributed
• Date/Time: Tuesday, August 11, 2015 : 2:00 PM to 3:50 PM
• Sponsor: Biometrics Section
• Author(s): Francesco Stingo* and Thierry Chekouo and Kim-Anh Do and James Doecke
• Companies: MD Anderson Cancer Center and MD Anderson Cancer Center and MD Anderson Cancer Center and CSIRO
• Keywords: Bayesian variable selection ; miRNA regulatory network ; non-local prior ; integromics

Abstract

The availability of cross-platform, large-scale genomic data has enabled the investigation of complex biological relationships for many cancers. Identification of reliable cancer-related biomarkers requires the characterization of multiple interactions across complex genetic networks. MicroRNAs are small non-coding RNAs that regulate gene expression; however, the direct relationship between a microRNA and its target gene is difficult to measure. We propose a novel Bayesian model to identify microRNAs and their target genes that are associated with survival time by incorporating the microRNA regulatory network through prior distributions. We assume that biomarkers involved in regulatory networks are likely associated with survival time. Using simulation studies, we assess the performance of our method, and apply it to experimental data of kidney renal cell carcinoma (KIRC) obtained from The Cancer Genome Atlas. Our novel method validates previously identified cancer biomarkers and identifies biomarkers specific to KIRC progression that were not previously discovered.