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Activity Number: 282 - Tools to Enable the Use of R by the Biopharmaceutical Industry in a Regulatory Setting
Type: Topic-Contributed
Date/Time: Wednesday, August 11, 2021 : 1:30 PM to 3:20 PM
Sponsor: Biopharmaceutical Section
Abstract #317480
Title: Packages for Automated Assessment and Standards Alignment of R Packages
Author(s): Mark Padgham* and Noam Ross
Companies: rOpenSci and Ecohealth Alliance
Keywords: R packages; standards; compliance; validation; automated assessment
Abstract:

rOpenSci is currently expanding its system for peer-review of R packages to include packages implementing statistical algorithms. This talk will briefly present two new tools developed for our expansion of scope, in order to assess statistical packages. The first, the "autotest" package, automatically generates and executes tests on R packages by determining the types of each input parameter for each function, and then mutating both types and values. This can be used to document and confirm the robustness of software to unexpected inputs. The second tool, the "rssr" package, allows standards compliance to be integrated directly into R package code. Developers use a roxygen-like system to annotate code to record where and how specific standards standards are addressed, as well as providing context or explanation for no-compliance. The integration of standards within the code itself enables the automatic generation of detailed, explicit, and cross-linked reports on standards compliance.


Authors who are presenting talks have a * after their name.

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