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Activity Number: 403
Type: Contributed
Date/Time: Wednesday, August 6, 2008 : 10:30 AM to 12:20 PM
Sponsor: Biometrics Section
Abstract - #300658
Title: Estimating the Proportion of True Null Hypotheses Using the Pattern of the Observed P-Values
Author(s): Tiejun Tong*+ and Zeny Feng and Hongyu Zhao
Companies: University of Colorado, Boulder and University of Guelph and Yale University School of Medicine
Address: Department of Applied Mathematics, Boulder, CO, 80309,
Keywords: gene expression data ; multiple testing ; histogram ; p-value ; bootstrap
Abstract:

Estimating the proportion of true null hypotheses, $\pi_0$, has attracted much attention in the recent statistical literature. Besides its apparent relevance for a set of specific scientific hypotheses, an accurate estimate of this parameter is key for many multiple testing procedures. Most existing methods for estimating $\pi_0$ in the literature are motivated from the independence assumption of test statistics, which is often not the truth in reality. In this article, we propose a new method for estimating $\pi_0$ by incorporating the distribution pattern of the observed $p$-values as a practical approach to address potential dependence among test statistics. Simulations and real study indicate that the proposed method substantially decrease the variance and thus improve the overall performance.


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