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Keyword Search Criteria: sequencing returned 55 record(s)
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Sunday, 07/29/2018
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Statistical Learning on Next-Generation Sequencing of T Cell Repertoire Data
Li Zhang, UCSF School of Medicine, UCSF; Tao He, San Francisco State University; Alan Paciorek, University of California, San Franciscornia ; Jason Cham, University of California, San Francisco; David Oh, University of California, San Francisco; Lawrence Fong, University of California, San Francisco
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A Nearly Optimal Sequential Testing Approach to Permutation-Based Association Testing
Julian Hecker, Harvard T.H. Chan School of Public Health; Ingo Ruczinski, Bloomberg School of Public Health; Brent A. Coull, Harvard TH Chan School of Public Health; Christoph Lange, Harvard T.H. Chan School of Public Health
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Survival Analysis Methods for Characterizing B-Cell Mutation Processes
David A. Shaw, Fred Hutchinson Cancer Research Center; Jean Feng, University of Washington; Vladimir N. Minin, University of California, Irvine; Noah Simon, University of Washington; Erick A. Matsen, Fred Hutchinson Cancer Research Center
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A Nearly Optimal Sequential Testing Approach to Permutation-Based Association Testing
Julian Hecker, Harvard T.H. Chan School of Public Health; Ingo Ruczinski, Bloomberg School of Public Health; Brent A. Coull, Harvard TH Chan School of Public Health; Christoph Lange, Harvard T.H. Chan School of Public Health
2:50 PM
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Survival Analysis Methods for Characterizing B-Cell Mutation Processes
David A. Shaw, Fred Hutchinson Cancer Research Center; Jean Feng, University of Washington; Vladimir N. Minin, University of California, Irvine; Noah Simon, University of Washington; Erick A. Matsen, Fred Hutchinson Cancer Research Center
3:00 PM
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Statistical Learning on Next-Generation Sequencing of T Cell Repertoire Data
Li Zhang, UCSF School of Medicine, UCSF; Tao He, San Francisco State University; Alan Paciorek, University of California, San Franciscornia ; Jason Cham, University of California, San Francisco; David Oh, University of California, San Francisco; Lawrence Fong, University of California, San Francisco
3:10 PM
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De Novo Detection and Accurate Inference of Differentially Methylated Regions
Keegan Korthauer, Dana-Farber Cancer Institute; Sutirtha Chakraborty, Novartis; Yuval Benjamini, Hebrew University of Jerusalem; Rafael Irizarry, Harvard University
4:20 PM
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A Bayesian Hierarchical Model for Analyzing Methylated RNA Immunoprecipitation Sequencing Data
Minzhe Zhang, University of Texas Southwestern Medical Center; Qiwei Li, University of Texas Southwestern Medical Center; Yang Xie, University of Texas Southwestern Medical Center
4:35 PM
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Monday, 07/30/2018
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Single-Cell RNA Sequencing: Dropout Imputation and Normalization with Spike-In Genes
Nicholas Lytal, University of Arizona; Di Ran, University of Arizona; Lingling An, University of Arizona
10:50 AM
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Single-Cell Gene Set Analysis with Applications in Tumor Heterogeneity
Lingling An, University of Arizona; Di Ran, University of Arizona; Nicholas Lytal, University of Arizona
11:20 AM
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Estimating Tumor Fraction in Circulating Cell-Free DNA Using Shallow Whole Genome Sequencing
Venkatraman Seshan, MSKCC; Nicholas Socci, MSKCC; Dana Tsui, MSKCC; Julie Yang, MSKCC
11:50 AM
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Statistical Issues in the Design and Analysis of Sequencing Studies
Danyu Lin, University of North Carolina
2:05 PM
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A Correlated Random Effects Hurdle Model for Detecting Differentially Expressed Genes in Discrete Single Cell RNA Sequencing Data
Michael Sekula, University of Louisville; Jeremy Gaskins, University of Louisville; Susmita Datta, University of Florida
2:05 PM
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Analysis of Quantitative Traits in Sequencing Studies with Outcome-Dependent Sampling
SAONLI BASU, University of Minnesota
2:30 PM
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Statistical Challenges and Opportunities for Analysis of Massive Biobank Data
Xihong Lin, Harvard University
2:55 PM
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Tuesday, 07/31/2018
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Penalized Latent Dirichlet Allocation Model in Single Cell RNA Sequencing
Xiaotian Wu, Brown University; Zhijin Wu, Brown University; Hao Wu, Emory University
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Visualization Methods for RNA-Sequencing Data Analysis
Lindsay Rutter, Iowa State University; Dianne Cook, Monash University
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SAVER: Gene Expression Recovery for UMI-Based Single Cell RNA Sequencing
Mo Huang, University of Pennsylvania; Jingshu Wang, University of Pennsylvania; Mingyao Li, University of Pennsylvania; Nancy Zhang, University of Pennsylvania
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Integrative Statistical Analysis Pipeline for RNA-Seq and NanoString with Application to Gene Expression Data of Cancer Patients
Jeea Choi, Novartis Pharmaceuticals; Catarina D. Campbell, Novartis Institutes for BioMedical Research; Xiaoshan Wang, Novartis Pharmaceuticals; He Wei, Novartis Pharmaceuticals; Robinson Douglas, Novartis Pharmaceuticals; Stephane Wong, Novartis Pharmaceuticals; Bin Fu, Novartis Pharmaceuticals; Rebecca Leary, Novartis Institutes for BioMedical Research; Kavitha Venkatesan, Novartis Institutes for BioMedical Research; Ying A Wang, Novartis Pharmaceuticals
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ProxECAT: Proxy External Controls Association Test. a New Case-Control Gene Region Association Test Using Allele Frequencies from Public Controls
Audrey Hendricks, University of Colorado - Denver; Stephen Billups, University of Colorado - Denver; Hamish Pike, University of Colorado-Aschutz Medical Campus; Eleftheria Zeggini, Wellcome Trust Sanger Institute; Stephanie Santorico, University of Colorado - Denver; Inês Barroso, Wellcome Trust Sanger Institute; Josee Dupuis, Boston University School of Public Health
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Analysis in Case-Control Sequencing Association Studies with Different Sequencing Depths
Sixing Chen, Harvard University; Xihong Lin, Harvard University
8:35 AM
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A Bayesian Hidden Markov Model for Detecting Differentially Methylated Regions
Tieming Ji, University of Missouri at Columbia
8:35 AM
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Integrative Statistical Analysis Pipeline for RNA-Seq and NanoString with Application to Gene Expression Data of Cancer Patients
Jeea Choi, Novartis Pharmaceuticals; Catarina D. Campbell, Novartis Institutes for BioMedical Research; Xiaoshan Wang, Novartis Pharmaceuticals; He Wei, Novartis Pharmaceuticals; Robinson Douglas, Novartis Pharmaceuticals; Stephane Wong, Novartis Pharmaceuticals; Bin Fu, Novartis Pharmaceuticals; Rebecca Leary, Novartis Institutes for BioMedical Research; Kavitha Venkatesan, Novartis Institutes for BioMedical Research; Ying A Wang, Novartis Pharmaceuticals
8:40 AM
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ProxECAT: Proxy External Controls Association Test. a New Case-Control Gene Region Association Test Using Allele Frequencies from Public Controls
Audrey Hendricks, University of Colorado - Denver; Stephen Billups, University of Colorado - Denver; Hamish Pike, University of Colorado-Aschutz Medical Campus; Eleftheria Zeggini, Wellcome Trust Sanger Institute; Stephanie Santorico, University of Colorado - Denver; Inês Barroso, Wellcome Trust Sanger Institute; Josee Dupuis, Boston University School of Public Health
8:40 AM
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Genetic Association Analysis of Copy Number Variation via a Bayesian Procedure in Whole Genome Sequencing
Yu-Chung Wei, Feng Chia University, TAIWAN
8:50 AM
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Visualization Methods for RNA-Sequencing Data Analysis
Lindsay Rutter, Iowa State University; Dianne Cook, Monash University
8:55 AM
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A Hidden Markov Modeling Approach for Identifying tumor Subclones in Next-Generation Sequencing Studies
Hyoyoung Choo-Wosoba, NCI/DCEG/BB; Paul S Albert, National Cancer Institute; Bin Zhu, NIH/NCI
9:05 AM
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SAVER: Gene Expression Recovery for UMI-Based Single Cell RNA Sequencing
Mo Huang, University of Pennsylvania; Jingshu Wang, University of Pennsylvania; Mingyao Li, University of Pennsylvania; Nancy Zhang, University of Pennsylvania
9:10 AM
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Penalized Latent Dirichlet Allocation Model in Single Cell RNA Sequencing
Xiaotian Wu, Brown University; Zhijin Wu, Brown University; Hao Wu, Emory University
9:35 AM
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Integrating External Controls Improves Power for Genetic Association Testing
Yatong Li, University of Michigan; Seunggeun Lee, University of Michigan
9:50 AM
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Modeling Dynamics of V(D)J Recombination in T Cell Formation
Kingshuk Roy Choudhury, Duke University, Dept. of Biostatistics and Bioinformatics
9:50 AM
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Methods and Study Design for Integrating External Controls with Allele Frequencies
Megan Sorenson, University of Colorado Denver; Audrey Hendricks, University of Colorado - Denver
10:05 AM
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Using Genomic Features to Make Smart Clinical Decisions: The Power of Machine Learning with RNA-Seq
Jing Huang, Veracyte Inc; Su yeon Kim , Veracyte Inc; Yangyang Hao, Veracyte Inc; Jing Lu, Veracyte Inc; Joshua Babiarz, Veracyte Inc; Sean Walsh, Veracyte Inc; Giulia Kennedy, Veracyte Inc
11:00 AM
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SMMAT: a Powerful and Efficient Variant Set Mixed Model Association Test for Binary and Quantitative Traits in Whole Genome Sequencing Studies with Correlated Samples
Han Chen, The University of Texas Health Science Center at Houston
11:05 AM
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Modeling Allele-Specific Gene Expression by Single-Cell RNA Sequencing
Yuchao Jiang, University of North Carolina, Chapel Hill; Nancy Zhang, University of Pennsylvania; Mingyao Li, University of Pennsylvania
11:50 AM
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Tumor Heterogeneity in Hepatocellular Carcinoma and Intrahepatic Cholangiocarcinoma
Ruibin Xi, Peking University
2:30 PM
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A Versatile and Adaptive Multiple Functional Annotations-Based Association Test of Whole-Genome Sequencing Data
Peng Wei, The University of Texas MD Anderson Cancer Center; Yiding Ma, The University of Texas MD Anderson Cancer Center
3:25 PM
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A Smoothed EM-Algorithm for Modeling DNA Methylation Profiles from Bisulfite Sequencing Data
Karim Oualkacha, Universite Du Quebec a Montreal; Celia M.T. Greenwood, Lady Davis Research Institute, McGill University; Kaiqiong Zhao, Epidemiology, Biostatistics and Occupational Health, and Human Genetics, McGill University; Lajmi Lakhal-Chaieb, Université Laval
3:25 PM
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Wednesday, 08/01/2018
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Harnessing Relatedness for Genotyping Autopolyploids
David Gerard, University of Chicago; Matthew Stephens, University of Chicago; Luis Felipe Ventorim Ferrão, University of Florida
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BinQuasi: a Peak Detection Method for ChIP-Sequencing Data with Biological Replicates
Emily Goren, Iowa Sate University; Peng Liu, Iowa State University; Chao Wang, Iowa State University; Chong Wang, Iowa State University
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TWO-SIGMA: a Two-Component Generalized Linear Mixed Model for ScRNA-Seq Association Analysis
Eric Van Buren, UNC Chapel Hill; Yun Li, University of North Carolina at Chapel Hill; Ming Hu, Cleveland Clinic Foundation; Di Wu, UNC Chapel HIll
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Bayesian Hierarchical Modeling of Clustered or Longitudinal RNA Sequencing Experiments
Brian Vestal, National Jewish Health; Camille Moore, National Jewish Health; Katerina Kechris, Colorado School of Public Health; Laura Saba, University of Colorado Anschutz Medical Campus; Tasha Fingerlin, National Jewish Health
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Variability-Preserving Imputation for Accurate Gene Expression Recovery in Single Cell RNA Sequencing Studies
Mengjie Chen, University of Chicago; Xiang Zhou, U of Michigan
8:35 AM
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ScImpute: Accurate and Robust Imputation for Single Cell RNA-Seq Data
Jingyi Li, University of California, Los Angeles; Wei Li, University of California, Los Angeles
8:55 AM
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Finite Alphabet Blind Separation
Merle Behr, University of Goettingen; Axel Munk, University of Goettingen; Chris Holmes, University of Oxford
9:15 AM
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A Nonparametric Bayesian Model for Single-Cell Variant Calling
Patrick Flaherty, University of Massachusetts, Amherst
9:50 AM
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Sequencing Data, Repeated Measures and Genetic Heritability
Katerina Kechris, Colorado School of Public Health; Brian Vestal, National Jewish Health; Wen Jenny Shi, University of Colorado Anschutz Medical Campus; Pratyaydipta Rudra, University of Colorado at Denver; Pamela Russell, University of Colorado Anschutz Medical Campus; Laura Saba, University of Colorado Anschutz Medical Campus
9:55 AM
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DiPhiSeq: Robust Comparison of Expression Levels on RNA-Seq Data with Large Sample Sizes
Alicia Lamere, Bryant University; Jun Li, University of Notre Dame
2:35 PM
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Variance Component Score Test for Differential Expression in RNAseq Studies
Denis Agniel, RAND Corporation; Boris Hejblum, Universite de Bordeaux
3:05 PM
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Thursday, 08/02/2018
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A Bayesian Semiparametric Regression Model for Joint Analysis of Microbiome Data
Juhee Lee, UC Santa Cruz; Marilou Sison-Mangus, Unversity of California, Santa Cruz
8:55 AM
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Single-Cell ATAC-Seq Signal Extraction and Enhancement
Hongkai Ji, Johns Hopkins Bloomberg School of Public Health; Zhicheng Ji, Johns Hopkins Bloomberg School of Public Health; Weiqiang Zhou, Johns Hopkins Bloomberg School of Public Health
10:35 AM
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A New Statistical Method for Genome-Scale Mutual Exclusivity Analysis of Tumor Mutations
Chi Wang, University of Kentucky; Sisheng Liu, Fred Hutchinson Cancer Research Center; Jinpeng Liu, Markey Cancer Center, University of Kentucky; Thilakam Murali, University of Kentucky; Tingting Zhai, University of Kentucky; Li Chen, University of Kentucky; Arnold Stromberg, University of Kentucky; Hunter Moseley, University of Kentucky
10:35 AM
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Missing Data and Technical Variability in Single-Cell RNA-Sequencing Experiments
Stephanie Hicks, Johns Hopkins SPH
10:55 AM
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Noise Modeling and Denoising of UMI-Based Single Cell RNA Sequencing Data
Nancy Zhang; Mo Huang, University of Pennsylvania; Mingyao Li, University of Pennsylvania; Jingshu Wang, University of Pennsylvania
11:35 AM
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Detection of Signal Regions in Whole Genome Genotyping and Sequencing Association Studies Using Scan Statistics
ZILIN LI, Harvard T.H. School of Public Health; Xihong Lin, Harvard University
11:55 AM
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