Keyword Search
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CC = Vancouver Convention Centre F = Fairmont Waterfront Vancouver
* = applied session ! = JSM meeting theme
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Keyword Search Criteria: genomic returned 63 record(s)
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Monday, 07/30/2018
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Integration of Multiple 'Omic Data Types for Screening Disease-Related Gene Sets with Applications in Lung Cancer
Su Hee Chu, Brigham and Women's Hospital and Harvard Medical School; Yen-Tsung Huang, Academia Sinica
8:35 AM
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Pathway and Network-Based Integrative Bayesian Modeling of Multiplatform Genomics Data
Veera Baladandayuthapani, UT MD Anderson Cancer Center; Jeffrey S Morris, The University of Texas M.D. Anderson Cancer Center; Elizabeth McGuffey, United States Naval Academy; Raymond J. Carroll, Texas A & M University; Min Jin Ha, UT MD Anderson Cancer Center
9:00 AM
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Building a Genomic Signature via Transfer Learning on Both Labelled and Unlabelled High-Dimensional Data: a Case Study in Predicting Prostate Cancer Metastasis
Yang Liu, GenomeDx Biosciences; Hossein Sharifi-Noghabi, Simon Fraser University; Nicholas Erho, GenomeDX Biosciences; Raunak Shrestha, Vancouver Prostate Centre; Mohammed Alshalalfa, GenomeDX Biosciences; Elai Davicioni, GenomeDX Biosciences; Colin Collins, Vancouver Prostate Centre; Martin Ester, Simon Fraser University
9:05 AM
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Two-Way Sparsity for Time-Varying Networks, with Applications in Genomics
Thomas Bartlett, University College London; Ricardo Silva, University College London; Ioannis Kosmidis, University of Warwick
9:50 AM
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Empirical Bayes Estimation of Gene Expression Fold Change
Abbas Rahal, University of Ottawa; Marta Padila, University of Ottawa; David R. Bickel, University of Ottawa
10:05 AM
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Joint Testing in High-Dimensional Instrumental Variables Regression with an Application to Genomics Data
Jiarui Lu, University of Pennsylvania; Hongzhe Li, University of Pennsylvania
10:35 AM
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Statistical Inference for Neuroimaging Genetics
Long Feng, Yale University; Xuan Bi, Yale University; Heping Zhang, Yale University School of Public Health
10:35 AM
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How Small Data Can Leverage Big Data, and/or Conversely
Bhramar Mukherjee, University of Michigan
10:55 AM
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Likelihood Estimation of Large Species Trees from Multiple Samples Per Species, Using the Coalescent Process
Arindam RoyChoudhury, Cornell University
10:55 AM
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Nonparametric Mediation Analysis for Investigating the ROle of Microbiome Health
Kyle Carter, University of Arizona; Meng Lu, University of Arizona; Lingling An, University of Arizona
11:50 AM
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Phylogenomic Inference in the Presence of Gene Flow Using Coalescent Site Pattern Probabilities
Laura Kubatko, Ohio State University; Colby Long, Mathematical Biosciences Institute, The Ohio State University
11:55 AM
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Statistical Issues in the Design and Analysis of Sequencing Studies
Danyu Lin, University of North Carolina
2:05 PM
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Bayesian Nonparametric Differential Analysis with Application to Colorectal Cancer DNA Methylation
Chiyu Gu, University of Missouri; Subharup Guha, University of Florida; Veera Baladandayuthapani, UT MD Anderson Cancer Center; Jeffrey S Morris, The University of Texas M.D. Anderson Cancer Center
3:05 PM
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A Bilinear Regression Approach to Inform Variable Selection by Continuous Functional Annotation Information
Pixu Shi; Sunduz Keles, University of Wisconsin, Madison; Ming Yuan, Columbia University
3:05 PM
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Cross-Validation for Dependent Multiple Testing
Josh Price, University of Arkansas; Jyotishka Datta, University of Arkansas
3:35 PM
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Tuesday, 07/31/2018
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Proteomics and Genomics Integration and Ovarian Cancer Survival
Umut Ozbek, Icahn School of Medicine at Mount Sinai; Christopher Conley, University of California at Davis; Jie Peng, UC Davis; Pei Wang, Icahn School of Medicine at Mount Sinai
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SAVER: Gene Expression Recovery for UMI-Based Single Cell RNA Sequencing
Mo Huang, University of Pennsylvania; Jingshu Wang, University of Pennsylvania; Mingyao Li, University of Pennsylvania; Nancy Zhang, University of Pennsylvania
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Supervised Dimension Reduction for Large-Scale Genomic Data with Censored Survival Outcomes Under Possible Non-Proportional Hazards
Lauren Spirko, Temple University; Karthik Devarajan, Fox Chase Cancer Center
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Issues Regarding Biomarker Combination Within ROC Framework: Strategies, Target Functions, and Large Number of Weak Markers
Lili Tian, SUNY at Buffalo; Li Yan, Roswell Park Cancer Institute; Jingjing Yin, Georgia Southern University; Le Kang, Virginia Commonwealth University
8:35 AM
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Cloud Computing Approaches to Genomic Data Science
Sean Davis, National Cancer Institute
8:35 AM
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Data Integration for the Simultaneous Estimation of Normal Means
Sihai Dave Zhao, University of Illinois at Urbana-Champaign
8:55 AM
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Improving the Value of Public Data with Recount2 and Phenotype Prediction
Shannon Ellis, Johns Hopkins University, Bloomberg School of Public Health
8:55 AM
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SAVER: Gene Expression Recovery for UMI-Based Single Cell RNA Sequencing
Mo Huang, University of Pennsylvania; Jingshu Wang, University of Pennsylvania; Mingyao Li, University of Pennsylvania; Nancy Zhang, University of Pennsylvania
9:10 AM
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Analyzing Large Scale Genomics Data with Apache Spark and ADAM
Frank Nothaft, Databricks
9:15 AM
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Robust Score Tests with Missing Data in Genomics Studies
Kin Yau Wong, Hong Kong Polytechnic University; Donglin Zeng, UNC Chapel Hill; Danyu Lin, University of North Carolina
9:20 AM
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Big Data Distributed System for Phenome and Genome Management and Analysis in a Large Health System
Wendy Wong, Inova Translational Medicine Institute; Xinyue Liu, Inova Translational Medicine Institute; Prachi Kothiyal, Inova Translational Medicine Institute; Wei Zhu, Inova Translational Medicine Institute; Fang Zhou, Inova Translational Medicine Institute; Shan Gao, Inova Translational Medicine Insitute; Sakthi Madhappan, Inova Translational Medicine Institute; Lin Smith, Inova Translational Medicine Institute; Henry Hunter, Inova Translational Medicine Institute; Aaron Black, Inova Translational Medicine Institute; John F Deeken, Inova Translational Medicine Institute; John E Niederhuber, Inova Translational Medicine Institute
9:55 AM
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Statistical Methods for Single-Cell RNA-Seq in Studies of Mammalian Development
Christina Kendziorski, University of Wisconsin - Madison; Zijian Wang, University of Wisconsin - Madison; Ron Stewart, Morgridge Institute for Research; Chris Barry, Morgridge Institute for Research; Li-Fang Chu, Morgridge Institute for Research
10:35 AM
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Iterated Curve Registration Extracts Signals from Noisy DNA Molecule Measurements
Subhrangshu Nandi, University of Wisconsin - Madison; Michael Newton, University of Wisconsin at Madison; David C Schwartz, University of Wisconsin - Madison
10:35 AM
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The Impact of Different Sources of Heterogeneity on Loss of Accuracy from Genomic Prediction Models
Levi Waldron, CUNY School of Public Health
10:55 AM
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Using Genomic Features to Make Smart Clinical Decisions: The Power of Machine Learning with RNA-Seq
Jing Huang, Veracyte Inc; Su yeon Kim , Veracyte Inc; Yangyang Hao, Veracyte Inc; Jing Lu, Veracyte Inc; Joshua Babiarz, Veracyte Inc; Sean Walsh, Veracyte Inc; Giulia Kennedy, Veracyte Inc
11:00 AM
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Supervised Dimension Reduction for Large-Scale Genomic Data with Censored Survival Outcomes Under Possible Non-Proportional Hazards
Lauren Spirko, Temple University; Karthik Devarajan, Fox Chase Cancer Center
11:00 AM
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Developing Genomic Biomarker to Guide Personalized Patient Management in Oncology: Validity and Utility of Clinical Diagnostic Applications
Michael Crager, Genomic Health; Ruixiao Lu, Genomic Health, Inc.
11:25 AM
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Inference of Transcription Factor Binding Sites in New Cell Types from Open Chromatin and Gene Expression Data
Michael M. Hoffman, Princess Margaret Cancer Centre/University of Toronto; Mehran Karimzadeh, University of Toronto
2:05 PM
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Detecting Developmental Expression Switches from Transcriptomic and Epigenomic Data
Claudia Kleinman, McGill University; Marie Forest, Lady Davis Research Institute, McGill University; Selin Jessa, McGill University; Celia M.T. Greenwood, Lady Davis Research Institute, McGill University
2:25 PM
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Large Numbers of Explanatory Variables
Heather Battey, Imperial College London; David Cox, Nuffield College
2:30 PM
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Inferring the Impact of Genetic Variation on Regulatory Networks
Sara Mostafavi
2:45 PM
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Understanding Gene Regulation Through Graph-Based Posterior Regularization in Structured Probabilistic Models
Maxwell Libbrecht, Simon Fraser University
3:05 PM
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Predicting Cancer Outcomes from Genomics Data
Peter Campbell, Wellcome Trust Sanger Institute
3:20 PM
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Wednesday, 08/01/2018
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Secondary Data Analysis to Predict Therapeutic Outcome of Colorectal Cancer Patients
Hannah Monique Bredikhin, Purdue University; Jun Xie, Purdue University
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Assessing Equivalent and Inverse Change in Genomic Data from Multiple Experiments: a New Approach to Functional Analysis
Jeffrey Thompson, The University of Kansas Medical Center
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A Bayesian Latent Variable Approach to Aggregation of Partial and Top Ranked Lists in Genomic Studies
Xue Li, Capital One; Xinlei (Sherry) Wang, Southern Methodist University; Pankaj Choudhary, University of Texas at Dallas; Swati Biswas, University of Texas at Dallas
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Expansion of a stochastic model for assessing CT reinfection risk
Kristin Olson, University of Alabama at Birmingham; William Geisler, University of Alabama at Birmingham; Hemant Tiwari, University of Alabama at Birmingham
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Interactive Statistical and Visual Analysis of Longitudinal Metagenomic
Hector Corradoa Bravo, University of Maryland
9:15 AM
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Mitigating the Adverse Impact of Batch Effects in Sample Pattern Detection
Teng Fei, Emory University; Tengjiao Zhang, School of Life Sciences and Technology, Tongji University; Weiyang Shi, School of Life Sciences and Technology, Tongji University; Tianwei Yu, Emory University
9:20 AM
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Genome-Wide Gaussian Process Regression for Survival Time Prediction
Aaron J. Molstad, Fred Hutchinson Cancer Research Center; Wei Sun, Fred Hutchinson Cancer Research Center; Li Hsu, Fred Hutchinson Cancer Research Center, USA
9:50 AM
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Sequencing Data, Repeated Measures and Genetic Heritability
Katerina Kechris, Colorado School of Public Health; Brian Vestal, National Jewish Health; Wen Jenny Shi, University of Colorado Anschutz Medical Campus; Pratyaydipta Rudra, University of Colorado at Denver; Pamela Russell, University of Colorado Anschutz Medical Campus; Laura Saba, University of Colorado Anschutz Medical Campus
9:55 AM
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Optimal Estimation of Simultaneous Signals Using Absolute Inner Product with Applications to Integrative Genomics
Rong Ma, University of Pennsylvania; Tianwen Cai, University of Pennsylvania; Hongzhe Li, University of Pennsylvania; Mark G Low, University of Pennsylvania
10:35 AM
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Estimation and Inference for the Indirect Effect in High-Dimensional Linear Mediation Models
Ruixuan Zhou, University of Illinois at Urbana-Champaign; Liewei Wang, Mayo Clinic; Dave Zhao, University of Illinois at Urbana-Champaign
10:50 AM
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Experiences with Teaching Genomic Data Science Online
Kasper Daniel Hansen, Johns Hopkins University
11:15 AM
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Bayesian Integrative Analysis of Radiogenomics
Youyi Zhang, The University of Texas MD Anderson Cancer Center UTHealth Graduate School of Biomedical S; Jeffrey S Morris, The University of Texas M.D. Anderson Cancer Center; Shivali Narang Aerry, Engineering for Professionals, Whiting School of Engineering, Johns Hopkins University; Arvind U.K. Rao, The University of Texas MD Anderson Cancer Center; Veera Baladandayuthapani, UT MD Anderson Cancer Center
11:15 AM
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GLMM-Seq: Detection of Population-Based Gene Level Allele-Specific Expression by RNA-Seq
Jiaxin Fan, University of Pennsylvania; Jian Hu, University of Pennsylvania; Muredach Reilly, Columbia University; Rui Xiao, University of Pennsylvania; Mingyao Li, University of Pennsylvania
11:35 AM
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Genotype Prediction for All Publicly Available RNA-Seq Data
Siruo Wang, Johns Hopkins Bloomberg SPH; Jeffrey Leek, Johns Hopkins Bloomberg School of Public Health
11:50 AM
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Genetic Correlations Between Imaging Traits and Common Diseases
Hongyu Zhao, Yale
2:05 PM
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Thursday, 08/02/2018
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A Bayesian Semiparametric Regression Model for Joint Analysis of Microbiome Data
Juhee Lee, UC Santa Cruz; Marilou Sison-Mangus, Unversity of California, Santa Cruz
8:55 AM
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Heterogeneous Reciprocal Graphical Models
Yang Ni, UT Austin; Peter Müller, University of Texas Austin; Yitan Zhu, NorthShore University HealthSystem; Yuan Ji, NorthShore Univ. HealthSystem / The University of Chicago
9:25 AM
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Bayesian Bi-Clustering Methods with Applications to Integrative Genomics and Genetics
Jun Liu, Harvard University; Yang Li, Vatic Labs; Jiexing Wu, Google
9:25 AM
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Single-Cell ATAC-Seq Signal Extraction and Enhancement
Hongkai Ji, Johns Hopkins Bloomberg School of Public Health; Zhicheng Ji, Johns Hopkins Bloomberg School of Public Health; Weiqiang Zhou, Johns Hopkins Bloomberg School of Public Health
10:35 AM
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A Mixed-Effects Model for Powerful Association Tests in Integrative Functional Genomics
Yu-Ru Su, Fred Hutchinson Cancer Research Center; Li Hsu, Fred Hutchinson Cancer Research Center, USA; Chongzhi Di, Fred Hutchinson Cancer Research Center
11:35 AM
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Noise Modeling and Denoising of UMI-Based Single Cell RNA Sequencing Data
Nancy Zhang; Mo Huang, University of Pennsylvania; Mingyao Li, University of Pennsylvania; Jingshu Wang, University of Pennsylvania
11:35 AM
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