Keyword Search
Sessions Were Renumbered as of May 19.
Legend:
CC-W = McCormick Place Convention Center, West Building, CC-N = McCormick Place Convention Center, North Building
H = Hilton Chicago, UC= Conference Chicago at University Center
* = applied session ! = JSM meeting theme
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Keyword Search Criteria: Genomics returned 72 record(s)
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Sunday, 07/31/2016
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A Fully Bayesian Strategy for High-Dimensional Hierarchical Modeling Using Massively Parallel Computing
William Landau, Iowa State University; Jarad Niemi, Iowa State University
2:05 PM
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Microbial DNA for Forensic Identification and Environmental Source Tracking
Dan Knights, University of Minnesota
2:45 PM
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Canonical Variate Regression for Integrative Analysis of Genomics Data
Kun Chen, University of Connecticut
2:45 PM
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Statistical Methods in Integrative Genomics
Lan Liu, Harvard; Wang Miao, Peking University; Baoluo Sun, Harvard; James Robins, Harvard; Eric Tchetgen Tchetgen, Harvard
2:55 PM
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A Penalized Multivariate Linear Mixed Effects Model for Integrative Proteo-Genomics Analysis Based on ITRAQ Data
Weiping Ma, Icahn School of Medicine at Mount Sinai; Lin Chen, The University of Chicago; Sung Won Han, New York University; Hua Zhong, New York University; Pei Wang, Icahn School of Medicine at Mount Sinai
2:55 PM
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Instrumental Variable Regression Models Using Multiple Genetic Markers
Rui Feng, University of Pennsylvania Perelman School of Medicine; Fan Wang, Cleveland Clinic
3:20 PM
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Survival Mediation Analysis Using Semiparametric Probit Models with Application to Integrative Genomics
Yen-Tsung Huang, Brown University; Tianxi Cai, Harvard
3:20 PM
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New Integrative Paradigms of Personalized Medicine for Cancer
Kim-Anh Do, MD Anderson Cancer Center; Veera Baladandayuthapani, MD Anderson Cancer Center; Francesco Stingo, MD Anderson Cancer Center; Min Jin Ha, MD Anderson Cancer Center; Thierry Chekouo Tekougang, MD Anderson Cancer Center
4:05 PM
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Integrative Analysis for Incorporating the Microbiome to Improve Precision Medicine
Hongzhe Li, University of Pennsylvania
4:30 PM
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Pathway-Based Integrative Bayesian Modeling of Multi-Platform Genomics Data
Elizabeth McGuffey, U.S. Naval Academy; Jeffrey S. Morris, MD Anderson Cancer Center; Raymond Carroll, Texas A&M University; Ganiraju C. Manyam, MD Anderson Cancer Center; Veera Baladandayuthapani, MD Anderson Cancer Center
5:05 PM
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A Spectral Approach for the Integration of Functional Genomics Annotations for Both Coding and Noncoding Sequence Variants
Iuliana Ionita-Laza, Columbia University; Kenneth McCallum, Columbia University
5:20 PM
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Detecting Association to Precision Networks via Conditional Multi-Type Graphical Models
Yanming Li, University of Michigan; Kevin He, University of Michigan; Jian Kang, University of Michigan; Hyokyoung (Grace) Hong, Michigan State University; Ji Zhu, University of Michigan; Yi Li, University of Michigan
5:20 PM
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Integrative Genomic Association Testing via Kernel Machine Mediation Analysis
Angela Hsiaohan Chen, University of Illinois at Urbana-Champaign; Sihai Zhao, University of Illinois at Urbana-Champaign
5:35 PM
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Monday, 08/01/2016
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An Adaptive Importance Sampling Approach for Efficiently Estimating Small P-Values in Permutation Tests
Yang Shi, University of Michigan; Huining Kang, University of New Mexico; Ji-Hyun Lee, University of New Mexico; Hui Jiang, University of Michigan
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Integrating Diverse Genomics Data Sets to Improve Precision Medicine in Cancer Treatment
Hongyu Zhao, Yale University
8:35 AM
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Dimensional Reduction of Metagenomic Data with Ecological Equivalence
Senthilkumar Muthiah, University of Maryland; Eric Slud, U.S. Census Bureau; Mihai Pop, University of Maryland; Hector Corrada Bravo, University of Maryland
8:35 AM
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Genomic Determination Index
Cheng Cheng, St. Jude Children's Research Hospital; Robert J. Autry, St. Jude Children's Research Hospital; Wenjian Yang, St. Jude Children's Research Hospital; Steven Paugh, St. Jude Children's Research Hospital; William E. Evans, St. Jude Children's Research Hospital
8:50 AM
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Intratumor Heterogeneity Analysis Using High-Throughput DNA Sequencing Data
Ronglai Shen, Memorial Sloan Kettering Cancer Center; Venkatraman Seshan, Memorial Sloan Kettering Cancer Center
9:15 AM
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Estimating Tumor Purity/Ploidy and Subclone Structure Using Multiple Types of Omic Data
Chong Jin, The University of North Carolina at Chapel Hill; Wei Sun, Fred Hutchinson Cancer Research Center; Mengjie Chen, The University of North Carolina at Chapel Hill; Danyu Lin, The University of North Carolina at Chapel Hill
9:35 AM
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Theoretic, Algorithmic, and Empirical Issues in the Application of Directed Probabilistic Graphical Models for Network Inference When Analyzing Genomics Data
Jason Mezey, Cornell University
9:35 AM
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Fast Approximation of Small P-Values in Permutation Tests by Partitioning the Permutation Space
Brian Segal; Hui Jiang, University of Michigan; Thomas Braun, University of Michigan
10:35 AM
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A Unified Framework for Variance Component Estimation with Summary Statistics in Genetic Association Studies
Xiang Zhou, University of Michigan
10:35 AM
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Overcoming Bias and Batch Effects in RNAseq Data
Michael I. Love, Harvard T.H. Chan School of Public Health; Rafael A. Irizarry, Dana-Farber Cancer Institute
11:00 AM
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An Adaptive Importance Sampling Approach for Efficiently Estimating Small P-Values in Permutation Tests
Yang Shi, University of Michigan; Huining Kang, University of New Mexico; Ji-Hyun Lee, University of New Mexico; Hui Jiang, University of Michigan
11:35 AM
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Impact of Handling Effects on Gene-Gene Interaction Discovery: An Empirical Assessment
Li-Xuan Qin, Memorial Sloan Kettering Cancer Center
11:55 AM
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Region-Level Differential Methylation Testing with Smoothed Functional Principal Component Analysis
Mohamed Milad; Gayla R. Olbricht, Missouri University of Science and Technology
2:35 PM
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Genomic Analysis with Common Binary Outcomes via Mediation
Sheila Gaynor, Harvard; Xihong Lin, Harvard T.H. Chan School of Public Health
2:35 PM
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Linking Image-Derived Radiophenotypes with Genomic Expression in Glioblastoma
Arvind Rao, MD Anderson Cancer Center
3:05 PM
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Assessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolution by Next-Generation Sequencing
Yuchao Jiang, University of Pennsylvania; Yu Qiu, University of Pennsylvania; Andy J. Minn, University of Pennsylvania; Nancy Zhang, University of Pennsylvania
3:05 PM
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Adaptively Choosing Hyperparameters for Non-Local Priors in High Dimensional Bayesian Variable Selection
Amir Nikooienejad, Texas A&M University; Valen E. Johnson, Texas A&M University
3:35 PM
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Tuesday, 08/02/2016
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Multicategory Classification Using High-Dimensional Predictors with Applications to Studying Effects of Rice Genome
Arkaprava Roy, North Carolina State University; Subhashis Ghoshal, North Carolina State University
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For the Microbiome, Zeroes Are Definitely of Non-Zero Importance
Pippa Simpson, Medical College of Wisconsin; Yumei Cao, Medical College of Wisconsin; Bevan Emma Huang, Janssen R&D; Jethro Johnson, Jackson Labs; Jeffrey B. Schwimmer, University of California at San Diego; mary holtz, Medical College of Wisconsin; george weinstock, The Jackson Laboratory for Genomic Medicine; Erica Weinstock, The Jackson Laboratory for Genomic Medicine; nita salzman, Medical College of Wisconsin
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Integrative Analysis of Multi-Platform Genomics Data
Shisi He, Georgetown University; Ao Yuan, Georgetown University
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Estimating Cell-Type-Specific Associations from Whole Blood Methylation
Richard Barfield; Xihong Lin, Harvard T.H. Chan School of Public Health
8:35 AM
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A Robust Approach for Identifying Differentially Abundant Features in Metagenomic Samples
Lingling An, University of Arizona; Michael Sohn, University of Pennsylvania; Ruofei Du, University of Arizona
8:50 AM
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What's in That Ecology? A Latent Factor Dirichlet-Multinomial Model for Metagenomic Count Data
John O'Brien, Bowdoin College
8:50 AM
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Integrative Analysis of Multi-Platform Genomics Data
Shisi He, Georgetown University; Ao Yuan, Georgetown University
8:55 AM
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Microbial Dynamical Systems INference Engine (MDSINE)
Georg Gerber, Harvard Medical School; Vanni Bucci, University of Massachusetts - Dartmouth; Belinda Tzen, Harvard Medical School
9:15 AM
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Assessing Reproducibility of Hi-C Data
Qunhua Li, Penn State University; Tao Yang, Penn State University
10:35 AM
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Statistical Models for Single Cell RNA RNA Analysis
Nancy Zhang, University of Pennsylvania; Cheng Jia, University of Pennsylvania; Yuchao Jiang, University of Pennsylvania; Mingyao Li, University of Pennsylvania
10:55 AM
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Methodological Strategies to Define a Generalizable Model for Machine Learning Ensemble Techniques
Joel Correa da Rosa, Rockefeller University; Lewis Tomalin, Icahn School of Medicine at Mount Sinai; Mayte Suárez-Fariñas, Icahn School of Medicine at Mount Sinai
11:35 AM
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Testing-Based Measures for Finding Correspondence of Genomic Samples
Jingyi (Jessica) Li, University of California at Los Angeles
11:55 AM
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TSCAN: Pseudo-Time Reconstruction and Evaluation in Single-Cell RNA-Seq Analysis
Zhicheng Ji, Johns Hopkins Bloomberg School of Public Health; Hongkai Ji, Johns Hopkins Bloomberg School of Public Health
2:20 PM
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A Statistical Method for Cross-Species Analysis of RNA-Seq Data
Yered Pita-Juarez, Harvard; Rafael A. Irizarry, Dana-Farber Cancer Institute; Michael I. Love, Harvard T.H. Chan School of Public Health
2:50 PM
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Statistical Analysis of Genomics Data for Disease Susceptibility and Drug Response
Jun Xie, Purdue University
3:05 PM
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Wednesday, 08/03/2016
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A New Method to Construct Large Gene Regulatory Networks Using Genetical Genomics Data
Chen Chen, Purdue University; Min Zhang, Purdue University; Dabao Zhang, Purdue University
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Stochastic Network Models with Applications to 'Omics Data
Thomas Bartlett, University College London
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Clustering Functional Data from High-Throughput Sequencing Assays
Emery Goossens; Heejung Shim, Purdue University
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Accounting for Correlations in Genetic Enrichment Analysis for Improved Interpretation of Genome-Scale Data
Duo Jiang, Oregon State University; Bin Zhuo, Oregon State University
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Statistical Methods for Genomic Data Integration
Veera Baladandayuthapani, MD Anderson Cancer Center
8:35 AM
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A New Method to Construct Large Gene Regulatory Networks Using Genetical Genomics Data
Chen Chen, Purdue University; Min Zhang, Purdue University; Dabao Zhang, Purdue University
9:00 AM
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Stochastic Network Models with Applications to 'Omics Data
Thomas Bartlett, University College London
9:10 AM
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Accounting for Correlations in Genetic Enrichment Analysis for Improved Interpretation of Genome-Scale Data
Duo Jiang, Oregon State University; Bin Zhuo, Oregon State University
9:40 AM
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Clustering Functional Data from High-Throughput Sequencing Assays
Emery Goossens; Heejung Shim, Purdue University
9:50 AM
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Mixed Graphical Model Selection with Applications to Integrative Genomics
Genevera Allen, Rice University; Yulia Baker, Rice University
10:35 AM
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Multi-Platform Integration: Pathway-Based IBAG and Gene-Specific Epigenetic Profiles
Jeffrey S. Morris, MD Anderson Cancer Center; Elizabeth McGuffey, U.S. Naval Academy; Yusha Liu, Rice University; Veera Baladandayuthapani, MD Anderson Cancer Center; Keith A. Baggerly, MD Anderson Cancer Center
10:35 AM
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Multi-Tuning Parameter Lasso for Sample Classification
Kimberly Siegmund, University of Southern California; Jie Liu, University of Southern California; Juan Pablo Lewinger, University of Southern California
10:35 AM
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Statistical Methods for Integrating the Phylogenetic Tree in Microbiome Data Analysis
Jun Chen, Mayo Clinic; Jian Xiao, Mayo Clinic
11:00 AM
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Integrated Kernel Learning for Genomic Data Mining and Prediction
Xuefeng Wang, SUNY Stony Brook; Zhenyu Zhang, SUNY Stony Brook; Minqin Chen, SUNY Stony Brook
11:25 AM
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A New Statistical Method for Longitudinal High-Dimensional Data Analysis
Yuping Zhang, University of Connecticut
2:25 PM
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Epigenome Isoform Analysis with Applications
Hongkai Ji, Johns Hopkins Bloomberg School of Public Health; Weixiang Fang, Johns Hopkins Bloomberg School of Public Health
2:45 PM
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An Accurate Method in Predicting Postmortem Interval Using Microbial Community Dynamics
Meng Lu, University of Arizona; Hongmei Jiang, Northwestern University; Lingling An, University of Arizona
2:50 PM
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Accounting for Sample Quality and Other Unwanted Effects in Single-Cell RNA-Seq Data
Davide Risso, University of California at Berkeley; Michael Cole, University of California at Berkeley; John Ngai, University of California at Berkeley; Nir Yosef, University of California at Berkeley; Sandrine Dudoit, University of California at Berkeley
3:05 PM
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Visualization and Computation Over Hierarchically Organized Features for Metagenomics and Epigenomics
Hector Corrada Bravo, University of Maryland
3:05 PM
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Batch Effects in Genomics Data
Florian Buettner; Oliver Stegle, EMBL-European Bioinformatics Institute
3:25 PM
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Thursday, 08/04/2016
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Improved Environmental Modeling in Statistical Genetics and Genomics
Claus Ekstrom, University of Copenhagen
9:20 AM
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The Functional False Discovery Rate Methodology and Applications to Genomics
Xiongzhi Chen, Princeton; David G. Robinson, Stack Overflow; John D. Storey, Princeton
9:35 AM
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False Discovery Rate Control for Identifying Simultaneous Signals
Sihai Zhao, University of Illinois at Urbana-Champaign
10:35 AM
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Build Individualized Treatment Rule on Scale Using Health Care Data with Genomic Information
Jin Zhou, University of Arizona; Haoda Fu; Kevin Doubleday, University of Arizona
10:35 AM
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A Genomically Informed High-Dimensional Predictor for Microbial Community Metabolic Profiles
Himel Mallick, Harvard; Eric Franzosa, Harvard; Lauren Mclver, Harvard; Soumya Banerjee, Harvard; Alexandra Sirota-Madi, Broad Institute; Aleksandar Kostic, Broad Institute ; Clary B. Clish, Broad Institute; Hera Vlamakis, Broad Institute; Ramnik Xavier, Broad Institute; Curtis Huttenhower, Harvard
10:50 AM
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A Clustering Algorithm for Human Genetic Data
Jae Brodsky, Thermo Fisher Scientific; Teresa Webster, Thermo Fisher Scientific; Dorothy Oliver, Thermo Fisher Scientific; Jeremy Gollub, Thermo Fisher Scientific; Barry Eynon, Thermo Fisher Scientific
11:20 AM
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Modeling Maternal-Offspring Gene-Gene Interactions at Multiple Loci Using the Quantitative-MFG Test with an Application to Human Birth Weight
Michelle M. Clark, University of California at Los Angeles; Olympe Chazara, University of Cambridge; Eric M. Sobel, University of California at Los Angeles; Ashley Moffett, University of Cambridge; Janet S. Sinsheimer, University of California at Los Angeles
12:05 PM
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