Keyword Search
Sessions Were Renumbered as of May 19.
Legend:
CC-W = McCormick Place Convention Center, West Building, CC-N = McCormick Place Convention Center, North Building
H = Hilton Chicago, UC= Conference Chicago at University Center
* = applied session ! = JSM meeting theme
|
Keyword Search Criteria: Genomic returned 95 record(s)
|
|
Sunday, 07/31/2016
|
Assessing Genomic Risk for Learning Problems with Neuroimaging Data
Heping Zhang, Yale School of Public Health; Chintan Mehta, Yale University
2:05 PM
|
A Fully Bayesian Strategy for High-Dimensional Hierarchical Modeling Using Massively Parallel Computing
William Landau, Iowa State University; Jarad Niemi, Iowa State University
2:05 PM
|
Alignment-Free Methods for Comparative Genomic Analysis
Shuai Hao; Hsin-Hsiung Huang, University of Central Florida; Jie Yang, University of Illinois at Chicago; Saul Alarcon, University of Illinois at Chicago
2:05 PM
|
Microbial DNA for Forensic Identification and Environmental Source Tracking
Dan Knights, University of Minnesota
2:45 PM
|
Canonical Variate Regression for Integrative Analysis of Genomics Data
Kun Chen, University of Connecticut
2:45 PM
|
Big Data Regression and Prediction for High-Throughput Genomic Data
Weiqiang Zhou, Johns Hopkins Bloomberg School of Public Health; Ben Sherwood, Johns Hopkins Bloomberg School of Public Health; Zhicheng Ji, Johns Hopkins Bloomberg School of Public Health; Fang Du, Johns Hopkins Bloomberg School of Public Health; Jiawei Bai, Johns Hopkins Bloomberg School of Public Health; Hongkai Ji, Johns Hopkins Bloomberg School of Public Health
2:50 PM
|
Statistical Methods in Integrative Genomics
Lan Liu, Harvard; Wang Miao, Peking University; Baoluo Sun, Harvard; James Robins, Harvard; Eric Tchetgen Tchetgen, Harvard
2:55 PM
|
A Penalized Multivariate Linear Mixed Effects Model for Integrative Proteo-Genomics Analysis Based on ITRAQ Data
Weiping Ma, Icahn School of Medicine at Mount Sinai; Lin Chen, The University of Chicago; Sung Won Han, New York University; Hua Zhong, New York University; Pei Wang, Icahn School of Medicine at Mount Sinai
2:55 PM
|
Instrumental Variable Regression Models Using Multiple Genetic Markers
Rui Feng, University of Pennsylvania Perelman School of Medicine; Fan Wang, Cleveland Clinic
3:20 PM
|
Survival Mediation Analysis Using Semiparametric Probit Models with Application to Integrative Genomics
Yen-Tsung Huang, Brown University; Tianxi Cai, Harvard
3:20 PM
|
New Integrative Paradigms of Personalized Medicine for Cancer
Kim-Anh Do, MD Anderson Cancer Center; Veera Baladandayuthapani, MD Anderson Cancer Center; Francesco Stingo, MD Anderson Cancer Center; Min Jin Ha, MD Anderson Cancer Center; Thierry Chekouo Tekougang, MD Anderson Cancer Center
4:05 PM
|
Integrative Analysis for Incorporating the Microbiome to Improve Precision Medicine
Hongzhe Li, University of Pennsylvania
4:30 PM
|
Pathway-Based Integrative Bayesian Modeling of Multi-Platform Genomics Data
Elizabeth McGuffey, U.S. Naval Academy; Jeffrey S. Morris, MD Anderson Cancer Center; Raymond Carroll, Texas A&M University; Ganiraju C. Manyam, MD Anderson Cancer Center; Veera Baladandayuthapani, MD Anderson Cancer Center
5:05 PM
|
A Spectral Approach for the Integration of Functional Genomics Annotations for Both Coding and Noncoding Sequence Variants
Iuliana Ionita-Laza, Columbia University; Kenneth McCallum, Columbia University
5:20 PM
|
Detecting Association to Precision Networks via Conditional Multi-Type Graphical Models
Yanming Li, University of Michigan; Kevin He, University of Michigan; Jian Kang, University of Michigan; Hyokyoung (Grace) Hong, Michigan State University; Ji Zhu, University of Michigan; Yi Li, University of Michigan
5:20 PM
|
Integrative Genomic Association Testing via Kernel Machine Mediation Analysis
Angela Hsiaohan Chen, University of Illinois at Urbana-Champaign; Sihai Zhao, University of Illinois at Urbana-Champaign
5:35 PM
|
Network Analysis for Gene Signaling Pathways
Samir Lababidi, FDA; Taxiarchis Botsis, FDA
5:35 PM
|
|
Monday, 08/01/2016
|
An Adaptive Importance Sampling Approach for Efficiently Estimating Small P-Values in Permutation Tests
Yang Shi, University of Michigan; Huining Kang, University of New Mexico; Ji-Hyun Lee, University of New Mexico; Hui Jiang, University of Michigan
|
Integrating Diverse Genomics Data Sets to Improve Precision Medicine in Cancer Treatment
Hongyu Zhao, Yale University
8:35 AM
|
Dimensional Reduction of Metagenomic Data with Ecological Equivalence
Senthilkumar Muthiah, University of Maryland; Eric Slud, U.S. Census Bureau; Mihai Pop, University of Maryland; Hector Corrada Bravo, University of Maryland
8:35 AM
|
Genomic Determination Index
Cheng Cheng, St. Jude Children's Research Hospital; Robert J. Autry, St. Jude Children's Research Hospital; Wenjian Yang, St. Jude Children's Research Hospital; Steven Paugh, St. Jude Children's Research Hospital; William E. Evans, St. Jude Children's Research Hospital
8:50 AM
|
Leveraging Functional Annotations in Genetic Risk Prediction for Human Complex Diseases
Yiming Hu, Yale University; Qiongshi Lu, Yale University; Hongyu Zhao, Yale University
9:05 AM
|
Intratumor Heterogeneity Analysis Using High-Throughput DNA Sequencing Data
Ronglai Shen, Memorial Sloan Kettering Cancer Center; Venkatraman Seshan, Memorial Sloan Kettering Cancer Center
9:15 AM
|
Modeling Micronuclei Count Data Using the Generalized Monotone Incremental Forward Stagewise Method: Application in Women with Breast Cancer
Rebecca Lehman, Virginia Commonwealth University; Colleen Jackson-Cook, Virginia Commonwealth University; Kellie J. Archer, Virginia Commonwealth University
9:20 AM
|
Estimating Tumor Purity/Ploidy and Subclone Structure Using Multiple Types of Omic Data
Chong Jin, The University of North Carolina at Chapel Hill; Wei Sun, Fred Hutchinson Cancer Research Center; Mengjie Chen, The University of North Carolina at Chapel Hill; Danyu Lin, The University of North Carolina at Chapel Hill
9:35 AM
|
Theoretic, Algorithmic, and Empirical Issues in the Application of Directed Probabilistic Graphical Models for Network Inference When Analyzing Genomics Data
Jason Mezey, Cornell University
9:35 AM
|
Annotation Regression of Genome-Wide Association Studies with Multiple Phenotypes
Sunyoung Shin, University of Wisconsin - Madison; Sunduz Keles, University of Wisconsin - Madison
9:35 AM
|
Latent Variable Methods for the Analysis of Genomic Data
John D. Storey, Princeton
10:35 AM
|
Fast Approximation of Small P-Values in Permutation Tests by Partitioning the Permutation Space
Brian Segal; Hui Jiang, University of Michigan; Thomas Braun, University of Michigan
10:35 AM
|
A Unified Framework for Variance Component Estimation with Summary Statistics in Genetic Association Studies
Xiang Zhou, University of Michigan
10:35 AM
|
Overcoming Bias and Batch Effects in RNAseq Data
Michael I. Love, Harvard T.H. Chan School of Public Health; Rafael A. Irizarry, Dana-Farber Cancer Institute
11:00 AM
|
An Adaptive Importance Sampling Approach for Efficiently Estimating Small P-Values in Permutation Tests
Yang Shi, University of Michigan; Huining Kang, University of New Mexico; Ji-Hyun Lee, University of New Mexico; Hui Jiang, University of Michigan
11:35 AM
|
Impact of Handling Effects on Gene-Gene Interaction Discovery: An Empirical Assessment
Li-Xuan Qin, Memorial Sloan Kettering Cancer Center
11:55 AM
|
A Bayesian GWAS Method Utilizing Haplotype Clusters for a Composite Breed Population
Danielle Wilson-Wells, University of Nebraska - Lincoln; Stephen D. Kachman, University of Nebraska - Lincoln
2:20 PM
|
Region-Level Differential Methylation Testing with Smoothed Functional Principal Component Analysis
Mohamed Milad; Gayla R. Olbricht, Missouri University of Science and Technology
2:35 PM
|
Genomic Analysis with Common Binary Outcomes via Mediation
Sheila Gaynor, Harvard; Xihong Lin, Harvard T.H. Chan School of Public Health
2:35 PM
|
Region-Based Hypothesis Test of Mediation Effect with Epigenomic Data Using Kernel Machine Regression
Jincheng Shen, Harvard T.H. Chan School of Public Health
2:45 PM
|
Simultaneous Detection and Estimation of Trait Associations with Genomic Phenotypes
Jean Morrison, University of Washington; Noah Simon, University of Washington; Daniela Witten, University of Washington
2:50 PM
|
Linking Image-Derived Radiophenotypes with Genomic Expression in Glioblastoma
Arvind Rao, MD Anderson Cancer Center
3:05 PM
|
Assessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolution by Next-Generation Sequencing
Yuchao Jiang, University of Pennsylvania; Yu Qiu, University of Pennsylvania; Andy J. Minn, University of Pennsylvania; Nancy Zhang, University of Pennsylvania
3:05 PM
|
Genomic Data Integration for GWAS and EQTL Analysis
Constanza Rojo, University of Wisconsin - Madison; Sunduz Keles, University of Wisconsin - Madison; Qi Zhang, University of Nebraska - Lincoln
3:05 PM
|
A Beta-Binomial Model to Compare Somatic Mutation Rates Between Groups of Cancer Patients
Hong Wang, University of Kentucky; Yong Chen, University of Pennsylvania Perelman School of Medicine; Jinze Liu, University of Kentucky; Heidi Weiss, University of Kentucky ; Susanne M. Arnold, University of Kentucky; Aronld Stromberg, University of Kentucky; Chi Wang, University of Kentucky
3:20 PM
|
Adaptively Choosing Hyperparameters for Non-Local Priors in High Dimensional Bayesian Variable Selection
Amir Nikooienejad, Texas A&M University; Valen E. Johnson, Texas A&M University
3:35 PM
|
|
Tuesday, 08/02/2016
|
Multicategory Classification Using High-Dimensional Predictors with Applications to Studying Effects of Rice Genome
Arkaprava Roy, North Carolina State University; Subhashis Ghoshal, North Carolina State University
|
For the Microbiome, Zeroes Are Definitely of Non-Zero Importance
Pippa Simpson, Medical College of Wisconsin; Yumei Cao, Medical College of Wisconsin; Bevan Emma Huang, Janssen R&D; Jethro Johnson, Jackson Labs; Jeffrey B. Schwimmer, University of California at San Diego; mary holtz, Medical College of Wisconsin; george weinstock, The Jackson Laboratory for Genomic Medicine; Erica Weinstock, The Jackson Laboratory for Genomic Medicine; nita salzman, Medical College of Wisconsin
|
Integrative Analysis of Multi-Platform Genomics Data
Shisi He, Georgetown University; Ao Yuan, Georgetown University
|
Estimating Cell-Type-Specific Associations from Whole Blood Methylation
Richard Barfield; Xihong Lin, Harvard T.H. Chan School of Public Health
8:35 AM
|
A Robust Approach for Identifying Differentially Abundant Features in Metagenomic Samples
Lingling An, University of Arizona; Michael Sohn, University of Pennsylvania; Ruofei Du, University of Arizona
8:50 AM
|
What's in That Ecology? A Latent Factor Dirichlet-Multinomial Model for Metagenomic Count Data
John O'Brien, Bowdoin College
8:50 AM
|
Integrative Analysis of Multi-Platform Genomics Data
Shisi He, Georgetown University; Ao Yuan, Georgetown University
8:55 AM
|
Microbial Dynamical Systems INference Engine (MDSINE)
Georg Gerber, Harvard Medical School; Vanni Bucci, University of Massachusetts - Dartmouth; Belinda Tzen, Harvard Medical School
9:15 AM
|
Assessing Reproducibility of Hi-C Data
Qunhua Li, Penn State University; Tao Yang, Penn State University
10:35 AM
|
Statistical Models for Single Cell RNA RNA Analysis
Nancy Zhang, University of Pennsylvania; Cheng Jia, University of Pennsylvania; Yuchao Jiang, University of Pennsylvania; Mingyao Li, University of Pennsylvania
10:55 AM
|
Methodological Strategies to Define a Generalizable Model for Machine Learning Ensemble Techniques
Joel Correa da Rosa, Rockefeller University; Lewis Tomalin, Icahn School of Medicine at Mount Sinai; Mayte Suárez-Fariñas, Icahn School of Medicine at Mount Sinai
11:35 AM
|
Testing-Based Measures for Finding Correspondence of Genomic Samples
Jingyi (Jessica) Li, University of California at Los Angeles
11:55 AM
|
Genomic Prediction Models on Wheat Doubled Haploid Population
Xiaowei Hu, Oklahoma State University; Lan Zhu, Oklahoma State University; Charles Chen, Oklahoma State University
12:05 PM
|
Robust Heritability and Predictive Accuracy Estimation in Plant Breeding
Vanda Lourenco, Universidade Nova de Lisboa; Hans-Peter Piepho, University of Hohenheim; Joseph Ochieng Ogutu, University of Hohenheim
2:05 PM
|
TSCAN: Pseudo-Time Reconstruction and Evaluation in Single-Cell RNA-Seq Analysis
Zhicheng Ji, Johns Hopkins Bloomberg School of Public Health; Hongkai Ji, Johns Hopkins Bloomberg School of Public Health
2:20 PM
|
Module-Based Reconstruction of Gene Regulatory Network into Predictive Modeling for High-Dimensional Genomic Data
Rui Zhong, AbbVie; Xin Huang, AbbVie; Viswanath Devanarayan, AbbVie
2:35 PM
|
A Statistical Method for Cross-Species Analysis of RNA-Seq Data
Yered Pita-Juarez, Harvard; Rafael A. Irizarry, Dana-Farber Cancer Institute; Michael I. Love, Harvard T.H. Chan School of Public Health
2:50 PM
|
Adaptive Surrogate Confounding Adjustment in Genomic Mediation Analysis and an Application to GTEx Data
Lin Chen, The University of Chicago; Fan Yang, The University of Chicago; Brandon Pierce, The University of Chicago
2:55 PM
|
Statistical Analysis of Genomics Data for Disease Susceptibility and Drug Response
Jun Xie, Purdue University
3:05 PM
|
|
Wednesday, 08/03/2016
|
A New Method to Construct Large Gene Regulatory Networks Using Genetical Genomics Data
Chen Chen, Purdue University; Min Zhang, Purdue University; Dabao Zhang, Purdue University
|
Stochastic Network Models with Applications to 'Omics Data
Thomas Bartlett, University College London
|
Clustering Functional Data from High-Throughput Sequencing Assays
Emery Goossens; Heejung Shim, Purdue University
|
Accounting for Correlations in Genetic Enrichment Analysis for Improved Interpretation of Genome-Scale Data
Duo Jiang, Oregon State University; Bin Zhuo, Oregon State University
|
Statistical Methods for Genomic Data Integration
Veera Baladandayuthapani, MD Anderson Cancer Center
8:35 AM
|
Incorporating Biological Information in Sparse Principal Component Analysis with Application to Genomic Data
Ziyi Li, Emory University; Qi Long, Emory University; Sandra Safo, Emory University
8:35 AM
|
A New Method to Construct Large Gene Regulatory Networks Using Genetical Genomics Data
Chen Chen, Purdue University; Min Zhang, Purdue University; Dabao Zhang, Purdue University
9:00 AM
|
Stochastic Network Models with Applications to 'Omics Data
Thomas Bartlett, University College London
9:10 AM
|
BatchQC: Interactive Software Framework for Evaluating Sample and Batch Effects in Genomic Data
Solaiappan Manimaran, Boston University; Evan Johnson, Boston University
9:35 AM
|
Accounting for Correlations in Genetic Enrichment Analysis for Improved Interpretation of Genome-Scale Data
Duo Jiang, Oregon State University; Bin Zhuo, Oregon State University
9:40 AM
|
Clustering Functional Data from High-Throughput Sequencing Assays
Emery Goossens; Heejung Shim, Purdue University
9:50 AM
|
Mixed Graphical Model Selection with Applications to Integrative Genomics
Genevera Allen, Rice University; Yulia Baker, Rice University
10:35 AM
|
Multi-Platform Integration: Pathway-Based IBAG and Gene-Specific Epigenetic Profiles
Jeffrey S. Morris, MD Anderson Cancer Center; Elizabeth McGuffey, U.S. Naval Academy; Yusha Liu, Rice University; Veera Baladandayuthapani, MD Anderson Cancer Center; Keith A. Baggerly, MD Anderson Cancer Center
10:35 AM
|
Multi-Tuning Parameter Lasso for Sample Classification
Kimberly Siegmund, University of Southern California; Jie Liu, University of Southern California; Juan Pablo Lewinger, University of Southern California
10:35 AM
|
Statistical Methods for Integrating the Phylogenetic Tree in Microbiome Data Analysis
Jun Chen, Mayo Clinic; Jian Xiao, Mayo Clinic
11:00 AM
|
Integrated Kernel Learning for Genomic Data Mining and Prediction
Xuefeng Wang, SUNY Stony Brook; Zhenyu Zhang, SUNY Stony Brook; Minqin Chen, SUNY Stony Brook
11:25 AM
|
COCACOLA: Binning Metagenomic Contigs Using Sequence COmposition, Read CoverAge, CO-Alignment, and Paired-End Read LinkAge
Fengzhu Sun, University of Southern California; Yang Lu, University of Southern California; Ting Chen, University of Southern California; Jed Fuhrman, University of Southern California
2:05 PM
|
Integrating Cell Line and Patient Genomic Data for Drug Response Prediction
Ker-Chau Li, Institute of Statistical Science, Academia Sinica
2:05 PM
|
A New Statistical Method for Longitudinal High-Dimensional Data Analysis
Yuping Zhang, University of Connecticut
2:25 PM
|
Epigenome Isoform Analysis with Applications
Hongkai Ji, Johns Hopkins Bloomberg School of Public Health; Weixiang Fang, Johns Hopkins Bloomberg School of Public Health
2:45 PM
|
An Accurate Method in Predicting Postmortem Interval Using Microbial Community Dynamics
Meng Lu, University of Arizona; Hongmei Jiang, Northwestern University; Lingling An, University of Arizona
2:50 PM
|
Accounting for Sample Quality and Other Unwanted Effects in Single-Cell RNA-Seq Data
Davide Risso, University of California at Berkeley; Michael Cole, University of California at Berkeley; John Ngai, University of California at Berkeley; Nir Yosef, University of California at Berkeley; Sandrine Dudoit, University of California at Berkeley
3:05 PM
|
Visualization and Computation Over Hierarchically Organized Features for Metagenomics and Epigenomics
Hector Corrada Bravo, University of Maryland
3:05 PM
|
Batch Effects in Genomics Data
Florian Buettner; Oliver Stegle, EMBL-European Bioinformatics Institute
3:25 PM
|
|
Thursday, 08/04/2016
|
An Analysis of Variation-Based Procedure for PCA on Multiple Groups
Zi Yang, University of Michigan; George Michailidis, University of Florida
8:35 AM
|
Improved Environmental Modeling in Statistical Genetics and Genomics
Claus Ekstrom, University of Copenhagen
9:20 AM
|
The Functional False Discovery Rate Methodology and Applications to Genomics
Xiongzhi Chen, Princeton; David G. Robinson, Stack Overflow; John D. Storey, Princeton
9:35 AM
|
False Discovery Rate Control for Identifying Simultaneous Signals
Sihai Zhao, University of Illinois at Urbana-Champaign
10:35 AM
|
Build Individualized Treatment Rule on Scale Using Health Care Data with Genomic Information
Jin Zhou, University of Arizona; Haoda Fu; Kevin Doubleday, University of Arizona
10:35 AM
|
A Genomically Informed High-Dimensional Predictor for Microbial Community Metabolic Profiles
Himel Mallick, Harvard; Eric Franzosa, Harvard; Lauren Mclver, Harvard; Soumya Banerjee, Harvard; Alexandra Sirota-Madi, Broad Institute; Aleksandar Kostic, Broad Institute ; Clary B. Clish, Broad Institute; Hera Vlamakis, Broad Institute; Ramnik Xavier, Broad Institute; Curtis Huttenhower, Harvard
10:50 AM
|
Measuring Bumps: Intervals for Effect Size of Selected Regions in Genomic Signal
Yuval Benjamini, Hebrew University ; Rafael A. Irizarry, Dana-Farber Cancer Institute; Jonathan Taylor, Stanford University
10:55 AM
|
A Clustering Algorithm for Human Genetic Data
Jae Brodsky, Thermo Fisher Scientific; Teresa Webster, Thermo Fisher Scientific; Dorothy Oliver, Thermo Fisher Scientific; Jeremy Gollub, Thermo Fisher Scientific; Barry Eynon, Thermo Fisher Scientific
11:20 AM
|
Modeling Maternal-Offspring Gene-Gene Interactions at Multiple Loci Using the Quantitative-MFG Test with an Application to Human Birth Weight
Michelle M. Clark, University of California at Los Angeles; Olympe Chazara, University of Cambridge; Eric M. Sobel, University of California at Los Angeles; Ashley Moffett, University of Cambridge; Janet S. Sinsheimer, University of California at Los Angeles
12:05 PM
|
|
|
